If youve only done 1000 miles since a rebuild, you dont really want to push it over 60 yet. Just a thought, have you changed the oil yet, if not you should do so.
The timing can be checked in the usual way, but since the plugs are a different colour, perhaps you should check they are the same grade and change them if not. The missfire could be worn pick ups, dirty slip ring, dirty points, failing condenser, dirty earth brush, etc.
You probably know this, but dont try the old "pencil in the plughole" way to measure timing, its a sure way to break the pencil inside the cylinder.