Hi Craigy,
You have me confused now too
I thought that it was the primary chain was too close to the rear case?
I was asking how far the adaptor( clutch center )sits onto the main shaft ?
Referto my article for a measurement (16mm?)
The adaptor rear scroll dictates the position of where the rear primary case should be, the scroll should be almost fully engaged, sometimes a felt washer sits between the adaptor and sliding plate, not to be confused with the large felt seal between the sliding plate and rear case.
The spacer you have fitted between the chaincase and frame looks fairly thick?
I would remove it, then bolt the inner case and it's spacer plate to the crankcase, use spacers to temporarily fit the front screws
Now measure the gap between the case and frame, along with checking the engagement of the clutch (adaptor) center if all is good use some washers to fill any gap between the two
John