Looks to me as if the quadrant teeth are displaced sideways in relation to the kickstart ratchet teeth. Also assume the bearings and bushes on the inner cover are all good with no radial movement. Bronze bush inside the ratchet cylinder is present.
First line of your post says it all. Without knowing which year the box is, here are a few possibles.
Early plunger box uses a flat clockspring, outer cover has no retaining nut for the spring, instead it uses just a peg on the inner cover. The quadrant has a splined shaft mounting, spring just hooks over a spline. So if you have an early box of this type, the quadrant may not be in the right place on the spline. It should be level with the inner end of the splines. Here the length of the splines on the kickstar shaft between the inner and outer covers controls the lateral position of the kickstart shaft and quadrant.
Later boxes use the more familiar type of spring, the quadrant design changes, so you get them with pointy or flat top teeth, which the ratchet tooth profile must match. Quadrants have a more positive location, appear brazed onto the shaft in some cases. The design requires a boss on the forging or an added cylindrical spacer to hold the shaft laterally as before.
So, you may have a mix'n match set of bits and all depends on what you have. Simple answer is that possibly the cylindrical spacer is missing that pushes the quadrant towards the inner cover to keep the teeth in line, part 67-3173. It all depends on what quadrant you have. As mentioned some seem to have this spacer incorporated into the machining of the kickstart shaft, so this won't apply, and if this is the case, I'm stumped. In all cases the quadrant locates against the kickstart shaft bush on the inner cover, and something in the design you have should locate it here with no chance of lateral shaft movement.
If I've misjudged the whole issue, similar but incorrect parts from another model are the possible solution. All this assumes the box is assembled as it should be, and the quadrant has not been messed with.
Swarfy