Any chance it could be a valve sticking when hot?
A useful diagnostic if it is ignition: Reduce the plug gaps. A lot!!! Run gently. If all is OK, this could indicate an insulation breakdown somewhere. The higher the cylinder pressure (high comp pistons, large throttle) the more volts you need to spark, and if there is a "better" gap someplace else, it sparks there, and not at the plug. Temporary very small gaps may help prove the point. The engine won't run right, so be gentle, and not for too long...
Whatever it is had transferred across all three mags. I assume you didn't change the plug leads, caps, and plugs?
I got caught out a year back with a VW car. It had leads that needed the small cap screwed on the end of the spark plug. These were not fitted, resulting in an extra gap in the HT circuit, higher than normal HT voltage, (a lot higher, 45kV!) and arcing all over the place. Funny thing, it had been like this for some years before it gave trouble. New leads and plugs, happy car...
Are your plugs too "cold", and oiling up shortly after setting out. (Pull one out at the roadside and check, and if it is "black and oily" that is not good...).
HTH,
Stan.