Slippery Sam, I am not clear about which mixing chamber top you are using, but I am assuming it is the non screw adjuster type. If that is the case, then as far as the cable goes you have made life difficult for your self. The type of cable that you should have bought is shown in the picture below. It is made specifically to fit the carb mixing chamber top with no screw in adjuster holes. The cable is made with the top hat incorperated as part of the cable assembly, and also includes an in line adjuster. Amal list three different mixing chamber tops for the monobloc. One to accomodate two screw adjusters, another one to suit two ferrule (top hat) cables, and a third type that has one screw adjuster hole, and one ferrule hole. I have never seen seen a split ferrule but that does not mean that they may not be available from some where. Certainly not Amal though. As for plugging the choke cable hole a blob of silicone sealant would do just fine I would have thought. Again looking at the Amal site I cannot see a specific part listed to do this job.
John