How did it run BEFORE you rebuilt the carb? Did you check the needle jet for correct size? Did the new needle look like the old one? If it's sooting up in regular riding conditions, it sounds like something to do with needle or needle jet, float level or other.
If it runs well on fresh plugs, I wouldn't bother looking at anything other than carburetion.
What you really need to do is a proper plug chop. With multiple rebuilds, different silencers, different fuels, etc., mixture conditions are going to change, and you have to figure out what they are now.