There are minor differences in the wiring schematic supplied by W and the typical wiring diagrams from back in the day. The forum link here shows two diagrams of the original sort, either of which would (also) be a perfectly good model and might make things a bit clearer for you because the wires are all shown individually from one end to t'other:
https://www.a7a10.net/forum/index.php?topic=8138.0Since you have bought the W version, it's probably best to follow their schematic rather than unwrap the harness and do it differently.
The W pos earth regulator is designed to operate with the dynamo as it was / is wired for a mechanical regulator, so the picture of the dynamo wiring should not be something to have to think about. The reason W put that info in the package is because dynamos can be wired differently for some other sorts of regulators: it's there so we can make sure, if dealing with an unknown dynamo, that it is definitely wired to suit.
F A D E wires go on the W regulator to correspond with the markings on it. That's to say Green to F, Yellow to D, Purple to A etc as described. If you have the original regulator, you'll see that it's marked F A D E too.
The switch will have its terminals all neatly numbered on the back, next to where the screw posts are. Follow that, and you won't go wrong. The wire from switch position 2 should go to the dipswitch, which then has the separate wires going to the headlamp bulb carrier, for dip and main beam. (The dipswitch may also have the horn push integral with it, in which case there's another wire there which comes from the horn.)
If you break the wiring down, there are basically three elements. Charging, Lights, and Bits and Pieces (ie just brake light and horn usually).
Charging comprises dynamo with its D and F terminals, the regulator with its F A D E terminals, the ammeter which is connected one side to the regulator A via switch T3, and the other side to the battery Live side - Neg in your case. Other battery terminal to earth (Pos).
Lights involve switch terminals 2, 4 and 5.
Bits and pieces - horn and brake light - are taken off the battery. Directly attached for the brake light; and from the battery live wire at the ammeter for the horn. The horn circuit is completed when you press the button, the brake light circuit by its little switch in the power supply wire from the battery.
A WISE PERSON WILL FIT ONE OR MORE FUSES. In the battery Live or Earth lead as an absolute minimum. 20A rating for 6v systems is generally regarded as a good safe bet. Being sure that it covers the horn and brake light circuits, which are perhaps the commonest causes of grief (along with the equally vulnerable tail light wiring should it chafe under the rear mudguard).
In terms of what specifically goes to what (at the risk of repetition):
It's Dyn D to Regulator D and Dyn F to Regulator F
Regulator E for earth to the frame
Regulator output 'A' - the purple wire on the W harness - to the main switch Terminal 3 and then to the Ammeter. (It's the 'same' wire basically which explains why there are four bits of purple poking out of your harness. Regulator A could equally have gone direct to the Ammeter, with a link from ammeter to Terminal 3. Same difference. You'll see in the older diagrams that it's done that way, with the one wire on 3 and two on the ammeter that side.)
Only
four switch terminals are used -
Power comes in at 3 for distribution as needed according to the switch position;
the feed to the dipswitch and headlight comes off 2,
the front pilot light (only) is at 4 and
the tail and speedo lights come off 5.
The front pilot turns off when the headlight is switched on. That's why it has its separate terminal, but it could equally come off terminal 5 which would make it stay on with the speedo tail light and headlamp, for what little power it consumes.
I think if you match your components and switches to the Wassell schematic (maybe lay everything out on a bench?), you'll find it reasonably simple to figure how it goes together. There aren't all that many wires and the colour coding isn't misleading, apart perhaps from 'Earth T4 and T5' all looking a bit black at the switch end! Dunno why for the Pos earth drawing they didn't use
RED for the earths, but there we go.